Are you getting the message:
Some local changes were possibly overwritten during the sync. You can retrieve any lost changes by examining the file backups on the Files tab and swiping on the following:
It should be followed by a list of the files. If you are getting a different message let me know.
Are you seeing any pattern to the files reported as being in conflict? beorg works on file last updated dates, so if there is a possibility these are being changed even when the content is not changing that might lead beorg to think there are changes which it doesn't have.
David Masterson
I'm getting the Beorg popup about sync conflicts almost all the time. I sync via Working Copy and I think it's been working quite well, but I could easily be missing something. It would help if Beorg could more specifically say which files have a potential sync conflict.